STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0178Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. (261 aa)    
Predicted Functional Partners:
amb3902
3-hydroxyacyl-CoA dehydrogenase.
 
 0.966
amb0634
Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
0.957
amb2561
Enoyl-CoA hydratase/carnithine racemase.
0.955
amb3583
Enoyl-CoA hydratase/carnithine racemase.
 
0.954
amb2596
3-hydroxyacyl-CoA dehydrogenase.
 
 0.951
amb2753
Uncharacterized protein; Possibly involved in aromatic compounds catabolism.
 
 
 0.833
amb0177
Predicted thioesterase.
  
  
 0.826
amb0173
NAD-dependent aldehyde dehydrogenase.
 
 0.817
amb0176
Ferredoxin-NADP reductase; Root-type isozyme, chloroplast precursor.
  
 
 0.755
amb2014
Phenylacetic acid-responsive transcriptional repressor.
 
   
 0.697
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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