STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0185PAS/PAC domain. (167 aa)    
Predicted Functional Partners:
amb0184
Methyl-accepting chemotaxis protein.
  
   0.928
amb3701
Methyl-accepting chemotaxis protein.
  
   0.906
amb2196
Methyl-accepting chemotaxis protein.
  
   0.905
amb3314
Methyl-accepting chemotaxis protein.
 
  
   0.903
amb4008
Methyl-accepting chemotaxis protein.
  
   0.901
amb2795
Methyl-accepting chemotaxis protein.
 
  
   0.895
amb1806
Methyl-accepting chemotaxis protein.
 
  
   0.891
amb0994
Methyl-accepting chemotaxis protein; Probable methyl-accepting taxis protein. May be the receptor that senses the torque generated from the interaction between the magnetosome dipole moment and the external magnetic field (Probable). Overproduction interferes with magnetotaxis, cells respond more slowly to changes in the magnetic field; requires the MamK-interacting C- terminus of the protein. The effect of magnetic sensing is to control flagellar rotation.
  
   0.885
amb3991
Methyl-accepting chemotaxis protein.
 
  
   0.884
amb3690
Methyl-accepting chemotaxis protein.
 
  
   0.858
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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