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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0189Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (223 aa)    
Predicted Functional Partners:
amb0188
Signal transduction histidine kinase.
 
 0.976
amb0190
Predicted membrane protein.
 
  
 0.886
amb1110
Signal transduction histidine kinase.
 
 
0.871
amb3006
Response regulator containing a CheY-like receiver domain and a GGDEF domain.
 
  
 0.843
amb1841
Hypothetical protein.
  
 
0.840
amb3438
Sensor protein gacS.
 
 
0.840
amb4146
Signal transduction histidine kinase.
  
 
0.840
amb1873
Signal transduction histidine kinase.
 
 
0.834
amb2636
Signal transduction histidine kinase.
 
 0.811
amb0650
Predicted periplasmic ligand-binding sensor domain.
  
 
 0.808
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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