Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb0204Uncharacterized protein; Conserved in bacteria. (229 aa)    
Predicted Functional Partners:
amb2812
Uncharacterized protein conserved in bacteria.
  
     0.682
amb1348
Hypothetical protein.
  
     0.506
amb0540
Outer membrane receptor protein; Mostly Fe transport.
  
     0.484
amb3940
Molecular chaperone; Belongs to the small heat shock protein (HSP20) family.
  
    0.477
amb0205
Uncharacterized protein; Conserved in bacteria.
       0.473
amb0624
Predicted hydrolase or acyltransferase; Alpha/beta hydrolase superfamily.
  
     0.442
amb0229
Homolog of Cu resistance protein CopC.
  
     0.431
amb2215
Molecular chaperone; Belongs to the small heat shock protein (HSP20) family.
   
    0.426
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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