Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
amb0209Hydrogenase 4 membrane component (E). (220 aa)    
Predicted Functional Partners:
amb0207
Ni,Fe-hydrogenase III large subunit.
 
  
 0.998
amb0206
Ni,Fe-hydrogenase III small subunit.
 
  
 0.985
amb0210
Formate hydrogenlyase subunit 4.
 
  
 0.982
amb0208
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter; MnhD subunit.
 
  
 0.977
amb0211
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit.
 
  
 0.949
amb2665
Ferredoxin.
     
 0.557
amb1990
Pyruvate-flavodoxin oxidoreductase.
     
 0.423
amb1929
Hypothetical protein.
  
     0.416
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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