STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
amb0211Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit. (669 aa)    
Predicted Functional Partners:
amb0207
Ni,Fe-hydrogenase III large subunit.
 
 
 0.998
amb0206
Ni,Fe-hydrogenase III small subunit.
 
 
 0.984
amb0210
Formate hydrogenlyase subunit 4.
 
 
 0.984
amb2776
NADH:ubiquinone oxidoreductase subunit 5; Chain L.
 
 
0.979
amb0208
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter; MnhD subunit.
 
  
0.972
amb0209
Hydrogenase 4 membrane component (E).
 
  
 0.949
amb2665
Ferredoxin.
  
 
 0.843
nuoI
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
 
 0.606
nuoB
NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity).
   
 
 0.521
amb0170
FdhA-II protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.487
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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