Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb0225Uncharacterized conserved protein. (255 aa)    
Predicted Functional Partners:
amb3307
Pirin-related protein; Belongs to the pirin family.
 
  
 0.695
amb3171
Pirin-related protein; Belongs to the pirin family.
 
  
 0.684
amb3997
Pirin-related protein; Belongs to the pirin family.
 
  
 0.660
amb0226
Hemerythrin-like protein PA1673.
       0.618
amb0227
Hypothetical protein.
       0.593
amb1299
Rhodanese-related sulfurtransferase.
 
    
 0.552
amb0224
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.541
amb0802
2-keto-4-pentenoate hydratase.
  
  
 0.460
amb0801
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.425
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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