Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
amb0229Homolog of Cu resistance protein CopC. (119 aa)    
Predicted Functional Partners:
amb0230
Putative copper export protein.
 
  
 0.962
amb3089
Uncharacterized protein conserved in bacteria.
  
  
 0.884
amb0705
Predicted iron-dependent peroxidase.
  
  
 0.828
amb0231
TRAP-type uncharacterized transport system; Periplasmic component.
 
     0.724
amb1817
Uncharacterized NAD(FAD)-dependent dehydrogenase.
    
   0.676
amb2173
Uncharacterized NAD(FAD)-dependent dehydrogenase.
    
   0.676
amb0228
Glycosyltransferase; Involved in cell wall biogenesis.
       0.562
amb4143
Hypothetical protein.
  
     0.552
amb3547
Outer membrane receptor protein; Mostly Fe transport.
  
     0.520
amb1368
Nucleoside phosphorylase.
 
     0.438
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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