STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb02542-pyrone-4,6-dicarbaxylate hydrolase. (305 aa)    
Predicted Functional Partners:
amb0258
Protocatechuate 4,5-dioxygenase beta chain.
 
  
 0.995
amb0255
4-carboxy-2-hydroxymuconate-6- semialdehydedehydrogenase.
 
  
 0.994
amb0257
Protocatechuate 4,5-dioxygenase alpha chain.
 
  
 0.994
amb0250
Uncharacterized protein; Conserved in bacteria.
  
 0.989
amb0253
3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase.
     0.966
amb0251
4-Oxalomesaconate hydratase.
 
   
 0.916
amb0252
4-Hydroxy-4-methyl-2-oxoglutarate aldolase.
 
   
 0.915
amb0256
Predicted oxidoreductase; Related to aryl-alcohol dehydrogenase.
 
  
 0.893
amb0259
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase.
 
   
 0.858
amb1551
Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase.
     
 0.802
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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