STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0258Protocatechuate 4,5-dioxygenase beta chain. (278 aa)    
Predicted Functional Partners:
amb0257
Protocatechuate 4,5-dioxygenase alpha chain.
  
 0.999
amb0254
2-pyrone-4,6-dicarbaxylate hydrolase.
 
  
 0.996
amb0255
4-carboxy-2-hydroxymuconate-6- semialdehydedehydrogenase.
 
  
 0.993
amb0259
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase.
 
 
 0.988
amb0250
Uncharacterized protein; Conserved in bacteria.
 
  
 0.975
amb0252
4-Hydroxy-4-methyl-2-oxoglutarate aldolase.
 
   
 0.913
amb0251
4-Oxalomesaconate hydratase.
 
   
 0.911
amb0253
3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase.
 
     0.892
amb0256
Predicted oxidoreductase; Related to aryl-alcohol dehydrogenase.
 
   
 0.856
amb0260
Permease of the major facilitator superfamily.
 
    0.528
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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