STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0261Membrane-associated phospholipid phosphatase. (262 aa)    
Predicted Functional Partners:
amb0262
4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family.
 
  
 0.879
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
  
  
 0.733
amb2972
Acyl-CoA synthetase/AMP-acid ligase II.
   
 0.720
rplF
Ribosomal protein L6P/L9E; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.701
rpoZ
DNA-directed RNA polymerase, subunit K/omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.677
amb3907
Superfamily protein.
 
  
 0.613
amb2852
Glutamate decarboxylase and related PLP-dependent protein.
   
 
 0.579
amb1450
Succinoglycan biosynthesis transport protein exoP.
  
  
 0.575
amb1622
4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family.
 
  
 0.574
amb1359
Hypothetical protein.
    
 0.534
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.