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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0283Membrane protein related to metalloendopeptidase. (304 aa)    
Predicted Functional Partners:
amb0284
Hypothetical protein.
       0.732
amb0304
Membrane-bound metallopeptidase.
 
   
 0.719
amb0282
Hypothetical protein.
       0.601
amb4398
Soluble lytic murein transglycosylase and related regulatory protein.
 
   
 0.556
amb2257
Signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.538
amb3236
Membrane carboxypeptidase/penicillin-binding protein.
 
   
 0.537
amb0524
Membrane carboxypeptidase.
  
   
 0.518
amb0285
Hypothetical protein RP006.
       0.491
amb3878
Sensor protein gacS.
  
 
 0.474
amb2965
Membrane carboxypeptidase/penicillin-binding protein PbpC.
  
     0.460
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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