STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0294Uncharacterized conserved protein. (326 aa)    
Predicted Functional Partners:
amb0295
Precorrin isomerase.
   
 0.987
amb0298
Precorrin-3B methylase.
   
 0.984
amb0297
Precorrin-2 methylase; Belongs to the precorrin methyltransferase family.
 
  
 0.983
amb1400
Uroporphyrinogen-III methylase.
 
  
 0.938
amb3364
Uncharacterized conserved protein.
     
  0.900
amb3363
Uroporphyrinogen-III methylase; Belongs to the precorrin methyltransferase family.
 
  
 0.828
amb0296
Precorrin-6Y C5,15-methyltransferase.
 
   
 0.823
cbiD
Cobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
 
   
 0.823
amb4427
Cobalamin biosynthesis protein CobN and related Mg-chelatase.
 
   
 0.772
amb0515
Uroporphyrinogen-III methylase; Belongs to the precorrin methyltransferase family.
  
 0.719
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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