STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0304Membrane-bound metallopeptidase. (505 aa)    
Predicted Functional Partners:
amb0303
Periplasmic protease; Belongs to the peptidase S41A family.
 
  
 0.937
amb4443
Cell division protein.
 
 
 
 0.911
amb0302
Skin secretory protein xP2 precursor.
 
   
 0.872
gpmI
Phosphoglyceromutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
       0.837
rppH
NTP pyrophosphohydrolase including oxidative damage repair enzyme; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.
   
   0.817
amb3238
N-acetylmuramoyl-L-alanine amidase.
 
   
 0.726
amb0283
Membrane protein related to metalloendopeptidase.
 
   
 0.719
amb1418
Predicted membrane protein.
 
     0.638
amb4535
Zn-dependent protease with chaperone function.
  
 
 0.610
amb0495
DNA polymerase III; Gamma/tau subunits.
  
     0.606
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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