Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb0319Hypothetical protein. (197 aa)    
Predicted Functional Partners:
amb3189
Hypothetical protein.
  
     0.772
amb3188
Hypothetical protein.
  
     0.770
amb0025
Hypothetical PE-PGRS family protein Rv1325c/MT1367 precursor; Msp1.
  
     0.769
amb0495
DNA polymerase III; Gamma/tau subunits.
  
     0.769
amb2845
Hypothetical protein.
  
     0.769
amb3515
Hypothetical protein.
  
     0.769
amb0021
Hypothetical protein.
  
     0.757
amb3928
Antifreeze glycopeptide polyprotein precursor.
  
     0.745
amb2364
Hypothetical 288 kDa protein in nifR3-like 5'region.
  
     0.742
amb3935
Uncharacterized protein conserved in bacteria.
  
     0.741
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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