STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0328SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (438 aa)    
Predicted Functional Partners:
amb0329
ABC-type uncharacterized transport system; Auxiliary component.
       0.787
amb0330
ABC-type transport system; Involved in resistance to organic solvents, periplasmic component.
       0.784
amb0331
ABC-type transport system; Involved in resistance to organic solvents, ATPase component.
       0.780
amb0334
Serine phosphatase RsbU; Regulator of sigma subunit.
       0.780
amb0332
ABC-type transport system; Involved in resistance to organic solvents, permease component.
  
    0.778
amb0333
Anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family.
       0.777
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
 
  
 0.631
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.599
amb0327
Uncharacterized protein; Conserved in bacteria.
       0.590
rsmI
Predicted methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
 
  
 0.580
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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