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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0329ABC-type uncharacterized transport system; Auxiliary component. (197 aa)    
Predicted Functional Partners:
amb0331
ABC-type transport system; Involved in resistance to organic solvents, ATPase component.
  
    0.868
amb0330
ABC-type transport system; Involved in resistance to organic solvents, periplasmic component.
  
   0.863
amb0334
Serine phosphatase RsbU; Regulator of sigma subunit.
       0.840
amb0333
Anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family.
       0.816
amb0332
ABC-type transport system; Involved in resistance to organic solvents, permease component.
  
  
 0.810
amb0328
SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.785
amb0327
Uncharacterized protein; Conserved in bacteria.
       0.590
amb0335
Hypothetical protein.
       0.564
amb0615
Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
    
   0.504
amb3497
Flagellar basal body-associated protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.504
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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