Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
amb0333 | amb0334 | Anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family. | Serine phosphatase RsbU; Regulator of sigma subunit. | 0.998 |
amb0333 | amb1110 | Anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family. | Signal transduction histidine kinase. | 0.853 |
amb0333 | amb1281 | Anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family. | Predicted signal transduction protein containing a membrane domain; EAL and a GGDEF domain. | 0.708 |
amb0333 | amb1841 | Anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family. | Hypothetical protein. | 0.693 |
amb0333 | amb2293 | Anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family. | Signal transduction histidine kinase. | 0.685 |
amb0333 | amb4146 | Anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family. | Signal transduction histidine kinase. | 0.693 |
amb0334 | amb0333 | Serine phosphatase RsbU; Regulator of sigma subunit. | Anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family. | 0.998 |
amb0334 | amb0579 | Serine phosphatase RsbU; Regulator of sigma subunit. | Anti-anti-sigma regulatory factor. | 0.975 |
amb0334 | amb0853 | Serine phosphatase RsbU; Regulator of sigma subunit. | Hypothetical protein. | 0.975 |
amb0334 | amb1110 | Serine phosphatase RsbU; Regulator of sigma subunit. | Signal transduction histidine kinase. | 0.979 |
amb0334 | amb1117 | Serine phosphatase RsbU; Regulator of sigma subunit. | Anti-anti-sigma regulatory factor; (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family. | 0.990 |
amb0334 | amb1281 | Serine phosphatase RsbU; Regulator of sigma subunit. | Predicted signal transduction protein containing a membrane domain; EAL and a GGDEF domain. | 0.977 |
amb0334 | amb1841 | Serine phosphatase RsbU; Regulator of sigma subunit. | Hypothetical protein. | 0.979 |
amb0334 | amb2293 | Serine phosphatase RsbU; Regulator of sigma subunit. | Signal transduction histidine kinase. | 0.977 |
amb0334 | amb3519 | Serine phosphatase RsbU; Regulator of sigma subunit. | Anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family. | 0.990 |
amb0334 | amb4146 | Serine phosphatase RsbU; Regulator of sigma subunit. | Signal transduction histidine kinase. | 0.978 |
amb0579 | amb0334 | Anti-anti-sigma regulatory factor. | Serine phosphatase RsbU; Regulator of sigma subunit. | 0.975 |
amb0579 | amb1110 | Anti-anti-sigma regulatory factor. | Signal transduction histidine kinase. | 0.833 |
amb0579 | amb1281 | Anti-anti-sigma regulatory factor. | Predicted signal transduction protein containing a membrane domain; EAL and a GGDEF domain. | 0.708 |
amb0579 | amb1841 | Anti-anti-sigma regulatory factor. | Hypothetical protein. | 0.693 |
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