Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb0355Hypothetical protein. (309 aa)    
Predicted Functional Partners:
amb0356
DNA or RNA helicase of superfamily II.
 
     0.950
amb0358
Hypothetical protein.
 
     0.950
amb0352
Hypothetical protein.
 
     0.891
amb0359
Hypothetical protein.
 
     0.856
amb0361
Hypothetical protein.
 
     0.853
amb1147
Hypothetical protein.
 
     0.790
amb1149
Hypothetical protein.
 
     0.783
amb0354
Hypothetical protein.
       0.780
amb0357
Hypothetical protein.
       0.780
amb1148
Hypothetical protein.
 
     0.780
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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