Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb0368Hypothetical protein. (196 aa)    
Predicted Functional Partners:
amb0371
Hypothetical protein.
 
     0.851
amb0372
Bacteriophage tail assembly protein.
 
    0.849
amb0379
Hypothetical protein.
 
     0.839
amb0374
Bacteriophage capsid protein.
 
     0.838
amb0376
Hypothetical protein.
 
    0.791
amb1168
Hypothetical protein.
 
     0.785
amb1169
Bacteriophage tail assembly protein.
 
    0.782
amb1148
Hypothetical protein.
 
   
 0.776
amb1147
Hypothetical protein.
 
     0.775
amb0359
Hypothetical protein.
  
     0.774
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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