STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0374Bacteriophage capsid protein. (476 aa)    
Predicted Functional Partners:
amb0372
Bacteriophage tail assembly protein.
 
  
 0.958
amb0375
Periplasmic serine protease.
 
  
 0.954
amb0371
Hypothetical protein.
 
     0.949
amb0376
Hypothetical protein.
 
  
 0.945
amb0377
Hypothetical protein.
 
     0.934
amb0379
Hypothetical protein.
 
     0.919
amb0368
Hypothetical protein.
 
     0.838
amb1169
Bacteriophage tail assembly protein.
 
  
 0.826
amb1521
Bacteriophage tail assembly protein.
 
  
 0.826
amb1172
Periplasmic serine protease.
 
  
 0.811
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.