Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb0377Hypothetical protein. (340 aa)    
Predicted Functional Partners:
amb0376
Hypothetical protein.
 
     0.941
amb0374
Bacteriophage capsid protein.
 
     0.934
amb0375
Periplasmic serine protease.
 
     0.933
amb0372
Bacteriophage tail assembly protein.
 
     0.929
amb0371
Hypothetical protein.
 
     0.922
amb0379
Hypothetical protein.
 
     0.849
amb1171
Bacteriophage capsid protein.
 
     0.787
amb1173
Hypothetical protein.
 
     0.787
amb0378
Hypothetical protein.
       0.785
amb1172
Periplasmic serine protease.
 
     0.779
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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