STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb0404Transposase and inactivated derivative; ISmag11,orf3; similar to IS66 family. (318 aa)    
Predicted Functional Partners:
amb0405
Transposase and inactivated derivative; ISmag11,orf2; similar to IS66 family.
 
     0.919
amb0406
Transposase and inactivated derivative; ISmag11,orf1; similar to IS66 family.
 
  
 0.878
amb0402
Transposase and inactivated derivative; ISmag11,orf2; similar to IS66 family.
  
     0.774
amb3319
Transposase and inactivated derivative; ISmag11,orf2; similar to IS66 family.
  
     0.774
amb3326
Transposase and inactivated derivative; ISmag11,orf2; similar to IS66 family.
  
     0.774
amb3318
Transposase and inactivated derivative; ISmag11,orf1; similar to IS66 family.
 
  
 0.689
amb3327
Transposase and inactivated derivative; ISmag11,orf1; similar to IS66 family.
 
  
 0.643
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.