Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb0422TRAP-type C4-dicarboxylate transport system, periplasmic component. (342 aa)    
Predicted Functional Partners:
amb0423
Hypothetical protein HI0147.
 
  
 0.981
amb1225
TRAP-type C4-dicarboxylate transport system; Periplasmic component.
  
  
  0.973
amb0810
TRAP-type C4-dicarboxylate transport system; Periplasmic component.
  
  
  0.954
amb0895
TRAP-type C4-dicarboxylate transport system; Periplasmic component.
  
  
 
0.927
amb1323
TRAP-type C4-dicarboxylate transport system; Periplasmic component.
  
  
 
0.925
amb2584
TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
   
 
 0.910
amb0893
TRAP-type C4-dicarboxylate transport system; Large permease component.
 
  
 0.803
amb0808
TRAP-type C4-dicarboxylate transport system; Large permease component.
 
  
 0.793
amb0894
TRAP-type C4-dicarboxylate transport system; Small permease component.
 
  
 0.738
amb0857
Predicted transporter component.
  
     0.516
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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