Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
amb0441Signal transduction histidine kinase. (740 aa)    
Predicted Functional Partners:
amb2293
Signal transduction histidine kinase.
 
 
0.946
amb1110
Signal transduction histidine kinase.
 
 
0.945
amb1841
Hypothetical protein.
 
 
0.937
amb4146
Signal transduction histidine kinase.
 
 
0.937
amb1432
Signal transduction histidine kinase.
 
 
0.935
amb3438
Sensor protein gacS.
 
 
0.933
amb0187
Serine phosphatase RsbU.
  
 
  0.924
amb1281
Predicted signal transduction protein containing a membrane domain; EAL and a GGDEF domain.
  
 
 0.908
amb0650
Predicted periplasmic ligand-binding sensor domain.
 
 
0.897
amb1872
PAS/PAC domain.
 
 
 0.873
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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