Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb0443Hypothetical protein. (282 aa)    
Predicted Functional Partners:
amb0442
Hypothetical protein.
       0.773
amb0440
Uncharacterized protein conserved in bacteria.
       0.581
amb0441
Signal transduction histidine kinase.
       0.581
amb0438
Serine phosphatase RsbU; Regulator of sigma subunit.
       0.559
amb0439
Uncharacterized conserved protein.
       0.559
amb0444
Hypothetical protein.
       0.509
amb0445
Hypothetical protein.
       0.509
amb0446
Transposase and inactivated derivative.
       0.509
amb0448
Hypothetical protein.
  
    0.402
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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