Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb0448Hypothetical protein. (214 aa)    
Predicted Functional Partners:
amb0447
Hypothetical protein.
  
    0.821
amb0449
Hypothetical protein.
       0.816
amb0452
Hypothetical protein.
     
 0.780
amb0450
Hypothetical protein.
       0.773
amb0451
Hypothetical protein.
       0.773
amb0446
Transposase and inactivated derivative.
       0.601
amb0445
Hypothetical protein.
       0.583
amb0444
Hypothetical protein.
  
    0.582
amb0454
Mu-like prophage FluMu host-nuclease inhibitor protein Gam.
       0.524
amb0455
Hypothetical protein.
       0.492
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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