STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0461Hypothetical protein. (243 aa)    
Predicted Functional Partners:
amb0462
Mu-like prophage protein gp16.
       0.782
amb0459
Hypothetical protein.
       0.773
amb0460
Retron-type reverse transcriptase.
       0.773
amb0458
Hypothetical protein.
       0.581
amb1171
Bacteriophage capsid protein.
 
    0.518
amb0374
Bacteriophage capsid protein.
 
    0.511
amb0356
DNA or RNA helicase of superfamily II.
  
    0.462
amb2709
Integrase; Belongs to the 'phage' integrase family.
  
    0.449
amb0454
Mu-like prophage FluMu host-nuclease inhibitor protein Gam.
       0.446
amb0455
Hypothetical protein.
       0.446
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.