Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb0476Cell wall-associated hydrolase. (150 aa)    
Predicted Functional Partners:
amb0471
Hypothetical protein.
       0.773
amb0472
Hypothetical protein.
       0.773
amb0473
Mu-like prophage FluMu protein gp27.
       0.773
amb0474
Hypothetical protein.
       0.773
amb0475
Uncharacterized conserved protein.
       0.773
amb0477
Hypothetical protein.
       0.773
amb0478
Hypothetical protein.
       0.773
amb0479
Hypothetical protein.
       0.727
amb0480
Hypothetical protein.
       0.722
amb0481
Site-specific DNA methylase.
       0.722
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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