STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0516Uncharacterized conserved protein. (252 aa)    
Predicted Functional Partners:
amb0515
Uroporphyrinogen-III methylase; Belongs to the precorrin methyltransferase family.
       0.791
amb4363
Cbb3-type cytochrome oxidase, cytochrome c subunit.
 
     0.777
amb0514
Precorrin-4 methylase.
       0.773
amb2910
Uncharacterized conserved protein.
  
     0.763
amb0517
Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems.
       0.752
amb3355
Protein rdxB.
 
     0.728
amb4190
Protein rdxB.
 
     0.723
amb4366
Polyferredoxin.
 
     0.717
amb4365
Cytochrome c, mono- and diheme variants; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
   
 0.662
amb2524
Uncharacterized protein conserved in bacteria.
   
    0.614
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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