STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0518Poly-beta-hydroxyalkanoate depolymerase. (408 aa)    
Predicted Functional Partners:
amb3725
Poly(3-hydroxyalkanoate) synthetase.
 
  
 0.973
amb0841
Poly-beta-hydroxybutyrate polymerase; phbC homolog.
 
  
 0.943
amb0519
Uncharacterized conserved protein; Belongs to the UPF0260 family.
       0.792
amb0839
Uncharacterized protein; Conserved in bacteria.
 
   
 0.770
amb0843
Dehydrogenase with different specificities; phbB homolog.
  
   
 0.607
amb2677
Dehydrogenase with different specificities; Related to short-chain alcohol dehydrogenase.
  
   
 0.594
clpX
ATP-dependent protease Clp; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
   
    0.530
amb3634
Predicted esterase of the alpha-beta hydrolase superfamily.
  
     0.453
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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