Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
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[Homology]
Score
amb0524Membrane carboxypeptidase. (708 aa)    
Predicted Functional Partners:
amb3842
Cell division protein FtsI/penicillin-binding protein 2.
 
 
 0.992
amb3516
Cell division protein FtsI/penicillin-binding protein 2.
 
 
 0.982
amb3236
Membrane carboxypeptidase/penicillin-binding protein.
 
 
0.950
amb2965
Membrane carboxypeptidase/penicillin-binding protein PbpC.
  
  
0.932
amb2451
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
 
 0.915
amb3847
Bacterial cell division membrane protein; Belongs to the SEDS family.
 
 
 
 0.795
amb3867
Membrane protein related to metalloendopeptidase.
  
   
 0.744
amb1974
Hypothetical protein.
   
 
 0.735
murA
UDP-N-acetylglucosamine enolpyruvyl transferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
   
 0.735
amb2528
Periplasmic protein TonB, links inner and outer membranes.
   
 
 0.735
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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