Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb0540Outer membrane receptor protein; Mostly Fe transport. (708 aa)    
Predicted Functional Partners:
amb3212
Periplasmic protein TonB, links inner and outer membranes.
  
 
 0.801
amb3549
Periplasmic protein TonB, links inner and outer membranes.
  
 
 0.801
amb1085
Uncharacterized protein with a C-terminal OMP domain.
    
 
 0.696
amb0539
Hypothetical protein.
       0.596
amb0600
Hypothetical 198 kDa protein in nifW 5'region.
  
     0.502
amb0204
Uncharacterized protein; Conserved in bacteria.
  
     0.484
amb2395
Uncharacterized conserved protein.
  
     0.434
amb2444
Uncharacterized conserved protein.
  
     0.434
amb4143
Hypothetical protein.
  
     0.433
amb3213
Biopolymer transport protein.
  
  
 0.422
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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