Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
amb0553Response regulator; Containing a CheY-like receiver domain and an HD-GYP domain. (360 aa)    
Predicted Functional Partners:
amb3261
FOG: GGDEF domain.
    0.961
amb4000
Response regulator containing a CheY-like receiver domain and a GGDEF domain.
 
  
 0.960
amb3451
Response regulator containing a CheY-like receiver domain and a GGDEF domain.
 
 0.943
amb1945
Response regulator; Containing a CheY-like receiver domain and a GGDEF domain.
 
  
 0.942
amb3699
FOG: GGDEF domain.
    0.916
amb4415
FOG: GGDEF domain.
 
 0.916
amb3405
Response regulator containing a CheY-like receiver domain and a GGDEF domain; PAS/PAC domain.
 
 0.894
amb3447
Signal transduction histidine kinase.
      0.886
amb3094
Hypothetical protein ydeH.
 
  
 0.870
amb3602
FOG: GGDEF domain.
    0.865
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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