STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0600Hypothetical 198 kDa protein in nifW 5'region. (179 aa)    
Predicted Functional Partners:
amb1582
Putative nifZ protein.
 
 
   0.828
amb1561
Nitrogenase stabilizing/protective protein nifW.
 
   
 0.787
amb1580
Hypothetical protein.
 
     0.784
amb3580
Hypothetical 77 kDa protein in fixX 3'region.
 
   
 0.782
amb1566
Hypothetical 175 kDa protein in nifX 3'region.
 
     0.781
amb1577
Hypothetical 157 kDa protein in draG 3'region; Belongs to the ArsC family.
  
     0.772
amb2952
NifX protein.
 
     0.756
amb1581
Protein fixU homolog.
 
     0.753
amb1565
Ferredoxin.
 
     0.729
amb1579
Ferredoxin V.
  
    0.723
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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