Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb0650Predicted periplasmic ligand-binding sensor domain. (1334 aa)    
Predicted Functional Partners:
amb1110
Signal transduction histidine kinase.
 
 
0.971
amb1116
Serine phosphatase RsbU regulator sigma subunit.
 
 
0.970
amb3520
Serine phosphatase RsbU, regulator of sigma subunit.
 
  
 0.966
amb3878
Sensor protein gacS.
 
 
0.965
amb0334
Serine phosphatase RsbU; Regulator of sigma subunit.
  
  
 0.962
amb1432
Signal transduction histidine kinase.
 
 
0.962
amb1841
Hypothetical protein.
 
 
0.960
amb2293
Signal transduction histidine kinase.
 
 
0.960
amb2930
Sensor protein barA.
 
 
0.960
amb3438
Sensor protein gacS.
 
 
0.960
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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