Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
amb0693Predicted methyltransferase; FOG: TPR repeat. (451 aa)    
Predicted Functional Partners:
amb0692
Hypothetical protein.
       0.773
mms24
TPR repeat; Probably forms a large homooligomer on which other magnetosome subunits assemble (Probable). Required for formation of functional magnetosomes from pre-existing vesicles, it has a dynamic location in the cell.
 
 
 0.582
amb3060
FOG: TPR repeat.
 
 
 0.574
amb2156
Hypothetical protein.
 
 
 0.561
amb4535
Zn-dependent protease with chaperone function.
  
 
 0.518
amb4436
FOG: TPR repeat.
 
   
 0.514
amb3810
Predicted O-linked N-acetylglucosamine transferase; SPINDLY family.
 
     0.513
amb0708
Predicted O-linked N-acetylglucosamine transferase; SPINDLY family.
 
 
0.509
amb4019
Predicted methyltransferase; TPR repeat.
 
 
0.505
amb2841
Predicted O-linked N-acetylglucosamine transferase; SPINDLY family.
 
  
0.503
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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