STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0705Predicted iron-dependent peroxidase. (300 aa)    
Predicted Functional Partners:
amb3089
Uncharacterized protein conserved in bacteria.
 
  
 0.859
amb0229
Homolog of Cu resistance protein CopC.
  
  
 0.828
amb0704
Uncharacterized conserved protein.
       0.773
greA
Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.746
carB
Carbamoylphosphate synthase large subunit; Belongs to the CarB family.
       0.698
amb0706
Hypothetical protein.
       0.603
carA
Carbamoylphosphate synthase small subunit; Belongs to the CarA family.
       0.540
amb0936
Hypothetical protein.
  
  
 0.503
amb0937
High-affinity Fe2+/Pb2+ permease.
  
  
 0.503
amb1681
High-affinity Fe2+/Pb2+ permease.
  
  
 0.503
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.