STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0715Hypothetical protein. (157 aa)    
Predicted Functional Partners:
amb0714
Spore coat polysaccharide biosynthesis protein.
  
 0.948
amb0716
Predicted nucleoside-diphosphate sugar epimerase.
 
   
 0.945
amb0717
Predicted pyridoxal phosphate-dependent enzyme apparently; Involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.914
amb0713
Sialic acid synthase.
 
  
 0.899
amb0718
Spore coat polysaccharide biosynthesis protein F.
 
  
 0.861
amb3806
Spore coat polysaccharide biosynthesis protein F; CMP-KDO synthetase homolog.
 
  
 0.721
rnc
dsRNA-specific ribonuclease; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.588
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
  
  
 0.581
amb0080
Sialic acid synthase.
 
  
 0.465
amb0092
Sialic acid synthase.
 
  
 0.456
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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