STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0718Spore coat polysaccharide biosynthesis protein F. (254 aa)    
Predicted Functional Partners:
amb0714
Spore coat polysaccharide biosynthesis protein.
  
 0.951
amb0713
Sialic acid synthase.
 
  
 0.911
amb0716
Predicted nucleoside-diphosphate sugar epimerase.
 
     0.880
amb0715
Hypothetical protein.
 
  
 0.864
amb0717
Predicted pyridoxal phosphate-dependent enzyme apparently; Involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.849
amb0080
Sialic acid synthase.
 
  
 0.686
amb0092
Sialic acid synthase.
 
  
 0.613
amb0615
Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
   
    0.539
amb0059
dTDP-glucose pyrophosphorylase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
    0.422
amb0156
dTDP-glucose pyrophosphorylase.
  
    0.422
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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