STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb08035-carboxymethyl-2-hydroxymuconate isomerase. (155 aa)    
Predicted Functional Partners:
amb0802
2-keto-4-pentenoate hydratase.
 
  
 0.988
amb0806
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; Catechol pathway.
 
 
 0.988
amb0807
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; Catechol pathway.
 
 
 0.988
amb0804
Uncharacterized conserved protein.
 
  
 0.987
amb0805
NAD-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.966
amb0801
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.963
amb0255
4-carboxy-2-hydroxymuconate-6- semialdehydedehydrogenase.
     
  0.900
amb0811
Transcriptional regulator.
 
   
 0.828
amb0815
Transcriptional regulator.
  
   
 0.779
amb2827
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; Catechol pathway.
 
  
 0.561
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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