Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
amb0809Hypothetical protein. (177 aa)    
Predicted Functional Partners:
amb0808
TRAP-type C4-dicarboxylate transport system; Large permease component.
 
 
 0.969
amb0423
Hypothetical protein HI0147.
  
 0.957
amb0810
TRAP-type C4-dicarboxylate transport system; Periplasmic component.
 
  
 0.955
amb0894
TRAP-type C4-dicarboxylate transport system; Small permease component.
     
 0.901
amb2582
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
   
 
  0.900
amb0807
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; Catechol pathway.
 
     0.766
amb0805
NAD-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.727
amb0806
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; Catechol pathway.
       0.727
amb0893
TRAP-type C4-dicarboxylate transport system; Large permease component.
  
 
 0.674
amb0804
Uncharacterized conserved protein.
 
     0.635
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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