Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 annotation | node2 annotation | score |
| amb0650 | amb0847 | Predicted periplasmic ligand-binding sensor domain. | Osmosensitive K+ channel histidine kinase. | 0.884 |
| amb0650 | amb0848 | Predicted periplasmic ligand-binding sensor domain. | Response regulator; Consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. | 0.836 |
| amb0650 | amb1110 | Predicted periplasmic ligand-binding sensor domain. | Signal transduction histidine kinase. | 0.990 |
| amb0650 | amb1432 | Predicted periplasmic ligand-binding sensor domain. | Signal transduction histidine kinase. | 0.981 |
| amb0650 | amb1872 | Predicted periplasmic ligand-binding sensor domain. | PAS/PAC domain. | 0.953 |
| amb0650 | amb1873 | Predicted periplasmic ligand-binding sensor domain. | Signal transduction histidine kinase. | 0.972 |
| amb0650 | amb2930 | Predicted periplasmic ligand-binding sensor domain. | Sensor protein barA. | 0.975 |
| amb0650 | amb3438 | Predicted periplasmic ligand-binding sensor domain. | Sensor protein gacS. | 0.981 |
| amb0650 | amb3878 | Predicted periplasmic ligand-binding sensor domain. | Sensor protein gacS. | 0.977 |
| amb0650 | amb4146 | Predicted periplasmic ligand-binding sensor domain. | Signal transduction histidine kinase. | 0.981 |
| amb0847 | amb0650 | Osmosensitive K+ channel histidine kinase. | Predicted periplasmic ligand-binding sensor domain. | 0.884 |
| amb0847 | amb0848 | Osmosensitive K+ channel histidine kinase. | Response regulator; Consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. | 0.964 |
| amb0847 | amb1110 | Osmosensitive K+ channel histidine kinase. | Signal transduction histidine kinase. | 0.902 |
| amb0847 | amb1432 | Osmosensitive K+ channel histidine kinase. | Signal transduction histidine kinase. | 0.897 |
| amb0847 | amb1872 | Osmosensitive K+ channel histidine kinase. | PAS/PAC domain. | 0.888 |
| amb0847 | amb1873 | Osmosensitive K+ channel histidine kinase. | Signal transduction histidine kinase. | 0.909 |
| amb0847 | amb2930 | Osmosensitive K+ channel histidine kinase. | Sensor protein barA. | 0.923 |
| amb0847 | amb3438 | Osmosensitive K+ channel histidine kinase. | Sensor protein gacS. | 0.867 |
| amb0847 | amb3878 | Osmosensitive K+ channel histidine kinase. | Sensor protein gacS. | 0.917 |
| amb0847 | amb4146 | Osmosensitive K+ channel histidine kinase. | Signal transduction histidine kinase. | 0.867 |
page 1 of 6