Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
amb0849Transcriptional regulator. (202 aa)    
Predicted Functional Partners:
amb0847
Osmosensitive K+ channel histidine kinase.
     
 0.785
amb0848
Response regulator; Consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
     
 0.774
amb0850
Xanthine and CO dehydrogenase maturation factor; XdhC/CoxF family.
       0.773
amb0846
Outer membrane receptor protein; Mostly Fe transport.
     
 0.553
amb4244
Predicted transcriptional regulator.
  
   
 0.441
pth
Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.436
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
     
 0.435
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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