STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb0850Xanthine and CO dehydrogenase maturation factor; XdhC/CoxF family. (259 aa)    
Predicted Functional Partners:
amb1564
NifQ protein.
  
 
 0.783
amb2878
NifU homolog involved in Fe-S cluster formation.
  
 
 0.783
amb3027
NifU homolog involved in Fe-S cluster formation; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
 
 0.783
amb0847
Osmosensitive K+ channel histidine kinase.
     
 0.774
amb0848
Response regulator; Consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.773
amb0849
Transcriptional regulator.
       0.773
amb2022
Xanthine and CO dehydrogenase maturation factor; XdhC/CoxF family.
   
 0.751
amb2020
4-hydroxybenzoyl-CoA reductase alpha subunit.
 
   
 0.681
amb1483
Aldehyde oxidoreductase.
 
  
 0.608
amb2019
4-hydroxybenzoyl-CoA reductase gamma subunit.
 
  
 0.600
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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