STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0878Acetyltransferase; Isoleucine patch superfamily. (227 aa)    
Predicted Functional Partners:
rnr
Exoribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
   
   0.792
amb0106
Acetyltransferase.
 
   
 0.763
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
  
  
 0.567
amb0112
Acetyltransferase; Isoleucine patch superfamily.
 
   
 0.546
amb0876
Hypothetical protein.
       0.540
amb1450
Succinoglycan biosynthesis transport protein exoP.
  
  
 0.534
amb1446
Sugar transferase involved in lipopolysaccharide synthesis.
  
  
 0.462
amb0874
Hypothetical protein.
   
 
 0.456
amb1070
ABC-type polysaccharide/polyol phosphate transport system; ATPase component.
    
 0.443
amb0037
Xanthan biosynthesis protein xanB; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.420
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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