STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0878Acetyltransferase; Isoleucine patch superfamily. (227 aa)    
Predicted Functional Partners:
rnr
Exoribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
   
   0.795
amb0106
Acetyltransferase.
 
     0.741
amb0112
Acetyltransferase; Isoleucine patch superfamily.
 
   
 0.549
amb0876
Hypothetical protein.
       0.540
amb1450
Succinoglycan biosynthesis transport protein exoP.
  
  
 0.519
amb0874
Hypothetical protein.
   
 
 0.470
amb1446
Sugar transferase involved in lipopolysaccharide synthesis.
  
  
 0.461
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
  
  
 0.452
amb1070
ABC-type polysaccharide/polyol phosphate transport system; ATPase component.
    
 0.442
amb0037
Xanthan biosynthesis protein xanB; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.416
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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