Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
amb0879Uncharacterized conserved protein. (276 aa)    
Predicted Functional Partners:
amb3977
Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.959
amb1624
Hypothetical protein.
  
  
 0.780
amb1843
Inner membrane protein involved in colicin E2 resistance.
   
    0.614
amb3948
Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.609
amb1244
Acyl-CoA synthetase.
    
  0.515
amb0634
Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 
  0.500
amb0852
Enoyl-CoA hydratase/carnithine racemase.
   
 
  0.500
amb2501
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
     
  0.500
amb2597
Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 
  0.500
amb2631
Acyl-CoA synthetase/AMP-acid ligase II.
     
  0.500
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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