STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0880Dehydrogenase with different specificities; Related to short-chain alcohol dehydrogenase. (250 aa)    
Predicted Functional Partners:
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
 
 
 0.798
amb2108
3-oxoacyl-(acyl-carrier-protein) synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 0.610
amb2105
S-malonyltransferase.
 
 0.594
amb1075
Hypothetical protein.
   
 
 0.562
amb0881
CBS domain.
       0.484
amb1465
ABC-type multidrug transport system; ATPase and permease component.
 
 
 0.484
amb0060
ABC-type multidrug transport system; ATPase and permease components.
 
 
 0.421
amb3535
Sulfate permease and related transporters; MFS superfamily.
  
 0.420
gatA
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
   
  
 0.419
amb1668
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase.
   
  
 0.419
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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