STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0889Uncharacterized iron-regulated protein. (338 aa)    
Predicted Functional Partners:
amb3547
Outer membrane receptor protein; Mostly Fe transport.
  
  
 0.714
amb0890
TRAP-type uncharacterized transport system; Periplasmic component.
  
    0.583
amb0891
TRAP-type uncharacterized transport system; Fused permease components.
       0.517
amb0892
Uncharacterized conserved protein.
       0.517
amb1544
Predicted signal-transduction protein containing cAMP-binding and CBS domains.
  
     0.436
amb3421
Hypothetical protein.
  
     0.420
nnrD
Hypothetical protein sll1433; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. In the C-terminal section; belongs to the NnrD/CARKD family.
 
     0.417
amb3212
Periplasmic protein TonB, links inner and outer membranes.
 
  
 0.404
amb0540
Outer membrane receptor protein; Mostly Fe transport.
  
  
 0.402
amb0846
Outer membrane receptor protein; Mostly Fe transport.
  
  
 0.402
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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