STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0893TRAP-type C4-dicarboxylate transport system; Large permease component. (427 aa)    
Predicted Functional Partners:
amb0894
TRAP-type C4-dicarboxylate transport system; Small permease component.
 
 0.996
amb0895
TRAP-type C4-dicarboxylate transport system; Periplasmic component.
  
 0.970
amb0423
Hypothetical protein HI0147.
 
0.960
amb0808
TRAP-type C4-dicarboxylate transport system; Large permease component.
  
  
 
0.918
amb1225
TRAP-type C4-dicarboxylate transport system; Periplasmic component.
  
 0.839
amb0810
TRAP-type C4-dicarboxylate transport system; Periplasmic component.
 
  
 0.808
amb0422
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
  
 0.800
amb0809
Hypothetical protein.
  
 
 0.649
sucD
Succinyl-CoA synthetase; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
   
  
 0.422
amb0896
C4-dicarboxylate transport sensor protein dctS.
       0.400
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.